SNP Profiles matching CERRO AZUL 10

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 Key

 1234567891011121314
_Input profile
TTCCACTTCTGGACCCAGTTAGGGAACC
1._IMC_14
__ACGTCT_AC_AGTT__AA_
2._RUQ_8
TTCCACGTCTGGACCGAGTTAGGGAACC
3._RUQ_1634
TTCCACGTCTGGACCGAGTTAGGGAACC
4._RUQ_761
TTCCACGTCTGGACCGAGTTAGGGAACC
5._RUQ_8
__ACGTCT_ACCGAGTT__AA_
6._IMC_11
__ACGTCT_ACCGAGTT__AA_
7._IMC_14
__ACGTCT_AACGAGTT__AA_
8._IMC_14
__ACGTCT_AACGAGTT__AA_
9._IMC_14
__ACGTCT_AACGAGTT__AA_
10._IMC_14
__ACGTCT_AACGAGTT__AA_
11._IMC_14
__ACGTCT_AACGAGTT__AA_
12._IMC_14
__ACGTCT_AACGAGTT__AA_
13._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
14._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
15._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
16._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
17._IMC_11
__ACGTCT_AACGAGTT__AA_
18._IMC_11
__ACGTCT_AACGAGTT__AA_
19._IMC_11
__ACGTCT_AACGAGTT__AA_
20._IMC_11
__ACGTCT_AACGAGTT__AA_
21._IMC_14
__ACGTCT_AACGAGTT__AA_
22._IMC_14
__ACGTCT_AACGAGTT__AA_
23._IMC_14
__ACGTCT_AACGAGTT__AA_
24._IMC_14
__ACGTCT_AACGAGTT__AA_
25._IMC_14
__ACGTCT_AACGAGTT__AA_
26._IMC_14
__ACGTCT_AACGAGTT__AA_
27._IMC_14
__ACGTCT_AACGAGTT__AA_
28._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
29._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
30._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
31._RUQ_1599
TTCCCCTTCCGGACCGAGTTAGGGAACC
32._IMC_11
__ACGTCT_AACGAGTT__AA_
33._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
34._RUQ_11
___GTCT_ACCCAGCT__AA_
35._GC-04-029-2-11
TTCCACGTCTGGAACGAGTTAGGGAACC
36._GC-04-029-2-11
TTCCACGTCTGGAACGAGTTAGGGAACC
37._GC-04-029-2-11
TTCCACGTCTGGAACGAGTTAGGGAACC
38._GC-04-029-2-11
TTCCACGTCTGGAACGAGTTAGGGAACC
39._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
40._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
41._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
42._GC-03-030-3-09
TTCCACGTCTGGAACGAGTTAGGGAACC
43._GC-04-054-3-18
TTCCACGTCTGGAACGAGTTAGGGAACC
44._RUQ_11
TTCCCCGTCTGGACCCAGTTAGGGAACC
45._RUQ_1633
TTCCCCGTCTGGACCCAGTTAGGGAACC
46._GC-04-029-2-11
TTCCACGTCTGGAACGAGTTAGGGAACC
 1516171819202122232425262728
_Input profile
AACCCTGGGGAACTCCTTGGGGTTAACC
1._IMC_14
AACCCTGGGGAA_CC_GG___CC
2._RUQ_8
AACCCTGGGGAACCCCTTGGGGTTACCC
3._RUQ_1634
AACCCTGGGGAACCCCTTGGGGTTACCC
4._RUQ_761
AACCCTGGGGAACCCCTTGGGGTTACCC
5._RUQ_8
AACCCTGGGGAA_CC_GG___CC
6._IMC_11
AACCCTGGGGAA_CC_GG___CC
7._IMC_14
AACCCTGGGGAA_CC_GG___CC
8._IMC_14
AACCCTGGGGAA_CC_GG___CC
9._IMC_14
AACCCTGGGGAA_CC_GG___CC
10._IMC_14
AACCCTGGGGAA_CC_GG___CC
11._IMC_14
AACCCTGGGGAA_CC_GG___CC
12._IMC_14
AACCCTGGGGAA_CC_GG___CC
13._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT_CC
14._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT_CC
15._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT_CC
16._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT_CC
17._IMC_11
AACCCTGGGGAA_CC_GG___CC
18._IMC_11
AACCCTGGGGAA_CC_GG___CC
19._IMC_11
AACCCTGGGGAA_CC_GG___CC
20._IMC_11
AACCCTGGGGAA_CC_GG___CC
21._IMC_14
AACCCTGGGGAA_CC_GG___CC
22._IMC_14
AACCCTGGGGAA_CC_GG___CC
23._IMC_14
AACCCTGGGGAA_CC_GG___CC
24._IMC_14
AACCCTGGGGAA_CC_GG___CC
25._IMC_14
AACCCTGGGGAA_CC_GG___CC
26._IMC_14
AACCCTGGGGAA_CC_GG___CC
27._IMC_14
AACCCTGGGGAA_CC_GG___CC
28._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT_CC
29._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
30._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
31._RUQ_1599
AACCCTGTGGAACTCCTTGGGGTTAACC
32._IMC_11
AA_CTGGGGAA_CC_GG___CC
33._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTT_CC
34._RUQ_11
AACCCTGTGGAA_CC_GG___CC
35._GC-04-029-2-11
AACCCTGGGGAACCCCCCGGGGTTACCC
36._GC-04-029-2-11
AACCCTGGGGAACCCCCCGGGGTTACCC
37._GC-04-029-2-11
AACCCTGGGGAACCCCCCGGGGTTACCC
38._GC-04-029-2-11
AACCCTGGGGAACCCCCCGGGGTTACCC
39._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
40._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
41._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
42._GC-03-030-3-09
AACCCTGGGGAACCCCCCGGGGTTACCC
43._GC-04-054-3-18
AACCCTGGGGAACCCCCCGGGGTTACCC
44._RUQ_11
AACCCTGTGGAACCCCTTGGGGTTACCC
45._RUQ_1633
AACCCTGTGGAACCCCTTGGGGTTACCC
46._GC-04-029-2-11
AA_CTGGGGAACCCCCCGGGGTTACCC
 2930313233343536373839404142
_Input profile
CCCCAACCCTGGGGTTTTTTCCTTCGAG
1._IMC_14
_CCAA_CT___GT__TTCGAG
2._RUQ_8
CCCCAACCCTGGGGTTGTTTCCTTCGAG
3._RUQ_1634
CCCCAACCCTGGGGTTGTTTCCTTCGAG
4._RUQ_761
CCCCAACCCTGGGGTTGTTTCCTTCGAG
5._RUQ_8
_CCAA_CT___GT__TTCGAG
6._IMC_11
_CCAA_CT___GT__TTCGAG
7._IMC_14
_CCAA_CT______TTCGAG
8._IMC_14
_CCAA_CT______TTCGAG
9._IMC_14
_CCAA_CT______TTCGAG
10._IMC_14
_CCAA_CT______TTCGAG
11._IMC_14
_CCAA_CT______TTCGAG
12._IMC_14
_CCAA_CT______TTCGAG
13._GC-03-030-3-09
CCCCAACCCTGGGGTT___TTCGAG
14._GC-03-030-3-09
CCCCAACCCTGGGGTT___TTCGAG
15._GC-03-030-3-09
CCCCAACCCTGGGGTT___TTCGAG
16._GC-03-030-3-09
CCCCAACCCTGGGGTT___TTCGAG
17._IMC_11
_CCAA_CT___GT__TTCGAG
18._IMC_11
_CCAA_CT___GT__TTCGAG
19._IMC_11
_CCAA_CT___GT__TTCGAG
20._IMC_11
_CCAA_CT___GT__TTCGAG
21._IMC_14
_CCAA_CT___GT__TTCGAG
22._IMC_14
_CCAA_CT___GT__TTCGAG
23._IMC_14
_CCAA_CT___GT__TTCGAG
24._IMC_14
_CCAA_CT___GT__TTCGAG
25._IMC_14
_CCAA_CT___GT__TTCGAG
26._IMC_14
_CCAA_CT___GT__TTCGAG
27._IMC_14
_CCAA_CT___GT__TTCGAG
28._GC-03-030-3-09
CCCCAACCCTGGGGTTGTTTCCTTCGAG
29._GC-03-030-3-09
CCCCAACCCTGGGGTT_TTCCTTCGAG
30._GC-03-030-3-09
CCCCAACCCTGGGGTT_TTCCTTCGAG
31._RUQ_1599
CC-AACCCCGGGGTTGGTTCCTTCGAG
32._IMC_11
_CCAA_CT___GT__TTCGAG
33._GC-03-030-3-09
CCCCAACCCTGGGGTTGT__TTCGAG
34._RUQ_11
_CTAA_CT___TT___CGAG
35._GC-04-029-2-11
CCCCAACCCTGGGGTTGTTTCCTTCGAG
36._GC-04-029-2-11
CCCCAACCCTGGGGTTGTTTCCTTCGAG
37._GC-04-029-2-11
CCCCAACCCTGGGGTTGTTTCCTTCGAG
38._GC-04-029-2-11
CCCCAACCCTGGGGTTGTTTCCTTCGAG
39._GC-03-030-3-09
CCCCAACCCTGGGGTTGTTTCCTTCGAG
40._GC-03-030-3-09
CCCCAACCCTGGGGTTGTTTCCTTCGAG
41._GC-03-030-3-09
CCCCAACCCTGGGGTTGTTTCCTTCGAG
42._GC-03-030-3-09
CCCCAACCCTGGGGTTGTTTCCTTCGAG
43._GC-04-054-3-18
CCCCAACCCTGGGGTTGTTTCCTTCGAG
44._RUQ_11
CCTTAACCCTGGGGTTTTCTCCTTCGAG
45._RUQ_1633
CCTTAACCCTGGGGTTTTCTCCTTCGAG
46._GC-04-029-2-11
CCCCAACCCTGGGGTTGTTTCCTTCGAG

Input profile: CERRO_AZUL_10 RUQ_936

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._IMC_14

95.7 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

2._IMC_11 RUQ_8

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._IMC_14 RUQ_1634

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._IMC_6 RUQ_761

94 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._IMC_11 RUQ_8

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._IMC_11

93.8 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F423 T1
 Dapeng Zhang, 2016

7._IMC_14

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

8._IMC_14

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

9._IMC_14

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

10._IMC_14

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

11._IMC_14

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

12._IMC_14

93.5 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

13._IMC_14 GC-03-030-3-09

92.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._IMC_14 GC-03-030-3-09

92.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

15._IMC_14 GC-03-030-3-09

92.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

16._IMC_14 GC-03-030-3-09

92.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

17._IMC_11

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 6 > FP
 Dapeng Zhang, 2016

18._IMC_11

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 1 > FP
 Dapeng Zhang, 2016

19._IMC_11

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 8
 Dapeng Zhang, 2016

20._IMC_11

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

21._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

22._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

23._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

24._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

25._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 3
 Dapeng Zhang, 2016

26._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 2
 Dapeng Zhang, 2016

27._IMC_14

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

28._IMC_14 GC-03-030-3-09

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._IMC_14 GC-03-030-3-09

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

30._IMC_14 GC-03-030-3-09

91.5 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

31._EBC_148 RUQ_1599

91.5 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

32._IMC_11

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4211 2 > FP
 Dapeng Zhang, 2016

33._IMC_14 GC-03-030-3-09

91 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

34._IMC_54 RUQ_11

90.9 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

35._IMC_11 GC-04-029-2-11

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

36._IMC_11 GC-04-029-2-11

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

37._IMC_11 GC-04-029-2-11

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

38._IMC_11 GC-04-029-2-11

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

39._IMC_14 GC-03-030-3-09

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

40._IMC_14 GC-03-030-3-09

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

41._IMC_14 GC-03-030-3-09

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

42._IMC_14 GC-03-030-3-09

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

43._IMC_14 GC-04-054-3-18

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

44._IMC_54 RUQ_11

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

45._IMC_58 RUQ_1633

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

46._IMC_11 GC-04-029-2-11

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484